Table 2 Examples of biomedical apps classified under “Structure builder and viewer ”
From: The world of biomedical apps: their uses, limitations, and potential
App name | OS | Description | App type | Hardware |
|---|---|---|---|---|
Atomdroid | Android | Include molecular viewer and builder functions for geometry optimization and Monte Carlo simulation for small molecules | Hybrid (Comp Lab) | None |
iMolecule Builder | iOS | Support formats from PDB, Sybyl and Crystallographic information. Visualize and build 3D molecules from scratch | Native (Comp Lab) | None |
iProtein | iOS | Provide access to PDB and Swiss- Prot, RefSeq, Ensembl, etc. Support accurate homology modeling by generating protein structural models | Hybrid (Comp Lab) | None |
PocketMDS | iOS | Perform molecular dynamics simulation of Lennard-Jones fluids | Native (Comp Lab) | None |
Yasaraa | Android | Support graphics, molecular modeling and docking | Native (Comp Lab) | None |
Android | Perform molecular dynamics simulation of particle motions and thermal changes of the molecular systems | Native (Comp Lab) | None | |
3D-Molecule View | Android | Built on top of jmol librabry and support multiple input formats to visualize 3D molecular structure | Native (Comp Lab) | None |
Ball&Stick | iOS | Support visualization and local storage of input from PDB | Hybrid (Comp Lab) | None |
Biochemistry Mnemonics | Android | Provide an interface of the Protein Data Bank to visualize or inspect protein structures in 3D or 2D. | Hybrid (Comp Lab) | None |
iMolview Lite | Android & iOS | Browse and view 3D protein and DNA structures | Hybrid (Comp Lab) | None |
Android | View three dimensional structures of proteins, nucleic acids and small molecules | Native (Comp Lab) | None | |
PDB Xplorer | Android | Visualize 3D structures of proteins, nucleic acids and small molecules | Native (Comp Lab) | None |
Pymol | iOS | Display proteins, nucleic acids, and other chemical structures, Support formats including pdb, sdf, mol2, pse, etc. | Native (Comp Lab) | None |